Research library - LIPID MAPS Publications: 2012

Key Lipidomics Publications

Special issues, with significant contributions from members of the LIPID MAPS Consortium

• Lipid Biochemistry, Metabolism, and Signaling Editorial

  Edited by H. Alex Brown and Lawrence J. Marnett. Chemical Reviews, 111, 5817-6512 (2011)

• Lipidomics and Imaging Mass Spectrometry

  Edited by Alfred H. Merrill and Robert C. Murphy. BBA - Molecular and Cellular Biology of Lipids, 1811, 635-1000 (2011)

• Lipidomics and Bioactive Lipids: Mass-Spectrometry-Based Lipid Analysis

  Edited by H. Alex Brown. Methods in Enzymology, 432, 1-387 (2007)
  - Download all LIPID MAPS Chapters (PDF).

Peer-reviewed journal articles

• A community-driven global reconstruction of human metabolism.

  Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.

• Macrophages, Inflammation, and Insulin Resistance

  Jerrold M. Olefsky, Christopher K. Glass Annual Review of Physiology, 72 219-246 (2010)

more key publications

Year published: 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017

• Lipidomics: when apocrypha becomes canonical.

  Brown HA

  Curr Opin Chem Biol 16, 221-226 (2012)

  doi: [10.1016/j.cbpa.2012.02.003]

• Probing Conformational Changes in Human DNA Topoisomerase IIα by Pulsed Alkylation Mass Spectrometry.

  Chen YT, Collins TR, Guan Z, Chen VB, Hsieh TS.

  J Biol Chem 287, 25660-8 (2012)

  PMID: 22679013

• A complement-IL-4 regulatory circuit controls liver regeneration.

  DeAngelis RA, Markiewski MM, Kourtzelis I, Rafail S, Syriga M, Sandor A, Maurya MR, Gupta S, Subramaniam S, Lambris JD

  J Immunol 188, 641-8 (2012)

  PMID: 22184721

• Dietary fish oil substitution dramatically alters the e 1 icosanoid profile in ankle joints of mice during Lyme infection.

  Dumlao DS, Cunningham AM, Wax LE, Norris PC, Hughes-Hanks JM, Halpin RE, Lett KM, Blaho VA, Mitchell WJ, Fritsche KL, Dennis EA, Brown CR

  J Nutrition 142, 1582-9 (2012)

  PMID: 22695969

• Lipidomics, Technologies and Applications.

  Edited by: Kim Ekroos

  John Wiley & Sons , (2012)

  doi: [10.1002/9783527655946]
  (recommended – but not funded – by LIPID MAPS)

• Evaluation of normalization methods in mammalian microRNA-Seq data.

  Garmire LX, Subramaniam S.

  RNA 18,1279-88 (2012)

  PMID: 22532701

• Inflammation and lipid signaling in the etiology of insulin resistance.

  Glass CK, Olefsky JM

  Cell Metab 15, 635-45 (2012)

  PMID: 22560216

• Spinal 12-lipoxygenase-derived Hepoxilin A3 contributes to inflammatory hyperalgesia via activation of TRPV1 and TRPA1 receptors.

  Gregus AM, Dumlao DS, Doolen S, Takasusuki T, Buczynski MW, Fitzsimmons BL, Hua XY, Taylor BK, Dennis EA, Yaksh TL

  Proc Natl Acad Sci U S A 109, 6721-6 (2012)

  PMID: 22493235

• The co-stimulatory immunogen LPS induces the B-cell clones that infiltrate transplanted human kidneys.

  Grover RK, Cheng J, Peng Y, Jones T, Ruiz D, Ulevitch RJ, Glass J, Dennis EA, Salomon IH, Lerner RA

  Proc Natl Acad Sci U S A 109, 6036-6041 (2012)

  PMID: 22492977

• Life with too much polyprenol: polyprenol reductase deficiency.

  Grundahl JE, Guan Z, Rust S, Reunert J, Muller B, Du Chesne I, Zerres K, Rudnik-Schoneborn S, Ortiz-Bruchle N, Hausler MG, Siedlecka J, Swiezewska E, Raetz CR, Marquardt T

  Mol Genet Metab 105, 642-51 (2012)

  PMID: 22304929

• Lipid diversity among botulinum neurotoxin-producing clostridia.

  Guan Z, Johnston NC, Raetz CR, Johnson EA, Goldfine H.

  Microbiology 158, (Pt 10):2577-84. (2012)

  PMID: 22837302

• Protein glycosylation as an adaptive response in Archaea: growth at different salt concentrations leads to alterations in Haloferax volcanii S-layer glycoprotein N-glycosylation.

  Guan Z, Naparstek S, Calo D, Eichler J

  Environ Microbiol 14, 743-53 (2012)

  PMID: 22029420 doi: [10.1111/j.1462-2920.2011.02625.x]

• Differential diagnosis in patients with suspected bile acid synthesis defects.

  Haas D, Gan-Schreier H, Langhans CD, Rohrer T, Engelmann G, Heverin M, Russell DW, Clayton PT, Hoffmann GF, Okun JG

  World J Gastroenterol 18, 1067-76 (2012)

  PMID: 22416181 doi: [10.3748/wjg.v18.i10.1067]

• Sphingosine 1-Phosphate (S1P) Lyase Deficiency Increases Sphingolipid Formation via Recycling at the Expense of de Novo Biosynthesis in Neurons.

  Hagen-Euteneuer N, Lutjohann D, Park H, Merrill AH, Jr., van Echten-Deckert G

  J Biol Chem 287, 9128-36 (2012)

  PMID: 22291021

• Essential role of ELOVL4 protein in very long chain fatty acid synthesis and retinal function.

  Harkewicz R, Du H, Tong Z, Alkuraya H, Bedell M, Sun W, Wang X, Hsu YH, Esteve-Rudd J, Hughes G, Su Z, Zhang M, Lopes VS, Molday RS, Williams DS, Dennis EA, Zhang K.

  J Biol Chem 287, 11469-80(2012)

  PMID: 22199362

• Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid.

  Kandiba L, Aitio O, Helin J, Guan Z, Permi P, Bamford DH, Eichler J, Roine E

  Mol Microbiol 84, 578-93 (2012)

  PMID: 22435790 doi: [10.1111/j.1365-2958.2012.08045.x]

• Role of Francisella lipid A phosphate modification in virulence and long-term protective immune responses.

  Kanistanon D, Powell DA, Hajjar AM, Pelletier MR, Cohen IE, Way SS, Skerrett SJ, Wang X, Raetz CR, Ernst RK

  Infect Immun 80, 943-51 (2012)

  PMID: 22215738

• Adiponutrin functions as a nutritionally regulated lysophosphatidic Acid acyltransferase.

  Kumari M, Schoiswohl G, Chitraju C, Paar M, Cornaciu I, Rangrez AY, Wongsiriroj N, Nagy HM, Ivanova PT, Scott SA, Knittelfelder O, Rechberger GN, Birner-Gruenberger R, Eder S, Brown HA, Haemmerle G, Oberer M, Lass A, Kershaw EE, Zimmermann R, Zechner R

  Cell Metab 15, 691-702 (2012)

  PMID: 22560221

• LPS remodeling is an evolved survival strategy for bacteria .

  Li Y, Powell DA, Shafferc SA, Raskod DA, Pelletierb MR, Leszykc JD, Scottb AJ, Masoudie A, Goodlettf DR, Wanga X, Raetz CR, Ernst RK

  Proc Natl Acad Sci U S A , Epub ahead of print (2012)

  PMID: 22586119

• CGI-58/ABHD5-Derived Signaling Lipids Regulate Systemic Inflammation and Insulin Action.

  Lord CC, Betters JL, Ivanova PT, Milne SB, Myers DS, Madenspacher J, Thomas G, Chung S, Liu M, Davis MA, Lee RG, Crooke RM, Graham MJ, Parks JS, Brasaemle DL, Fessler MB, Brown HA, Brown JM

  Diabetes 61, 355-63 (2012)

  PMID: 22228714

• Acid ceramidase (ASAH1) is a global regulator of steroidogenic capacity and adrenocortical gene expression.

  Lucki NC, Bandyopadhyay S, Wang E, Merrill AH, Sewer MB

  Mol Endocrinol 26, 228-43 (2012)

  PMID: 22261821

• A comprehensive method for extraction and quantitative analysis of sterols and secosteroids from human plasma.

  McDonald JG, Smith DD, Stiles AR, Russell DW

  J Lipid Res , (2012)

  PMID: 22517925

• LpxI structures reveal how a lipid A precursor is synthesized.

  Metzger LE 4th, Lee JK, Finer-Moore JS, Raetz CR, Stroud RM.

  Nat Struct Mol Biol. Nov;19(11):1132-8.

  (2012)

  PMID: 23042606 doi: [10.1038/nsmb.2393]

• Dietary linoleate preserves cardiolipin and attenuates mitochondrial dysfunction in the failing rat heart.

  Mulligan CM, Sparagna GC, Le CH, De Mooy AB, Routh MA, Holmes MG, Hickson-Bick DL, Zarini S, Murphy RC, Xu FY, Hatch GM, McCune SA, Moore RL, Chicco AJ

  Cardiovasc Res , Epub ahead of print (2012)

  PMID: 22411972

• A predicted geranylgeranyl reductase reduces the omega-position isoprene of dolichol phosphate in the halophilic archaeon, Haloferax volcanii.

  Naparstek S, Guan Z, Eichler J

  Biochim Biophys Acta 1821, 923-933 (2012)

  PMID: 22469971

• Omega-3 fatty acids cause dramatic changes in TLR-4 and purinergic signaling.

  Norris PC, Dennis EA

  Proc Natl Acad Sci U S A , Epub ahead of print (2012)

  PMID: 22586114

• Targeted proteomics of the eicosanoid biosynthetic pathway completes an integrated genomics-proteomics-metabolomics picture of cellular metabolism.

  Sabido E, Quehenberger O, Shen Q, Chang V, Shah I, Armando A, Andreyev A, Vitek O, Dennis EA, Aebersold R

  Mol Cell Proteomics , Epub ahead of print (2012)

  PMID: 22361236

• Group IVA phospholipase A(2) is necessary for growth cone repulsion and collapse.

  Sanford SD, Yun BG, Leslie CC, Murphy RC, Pfenninger KH

  J Neurochem 120, 974-84 (2012)

  PMID: 22220903 doi: [10.1111/j.1471-4159.2012.07651.x]

• Ablation of ceramide synthase 2 strongly affects biophysical properties of membranes.

  Silva LC, Ben David O, Pewzner-Jung Y, Laviad EL, Stiban J, Bandyopadhyay S, Merrill AH Jr, Prieto M, Futerman AH

  Journal of Lipid Research 53, 430-6 (2012)

  PMID: 22231783

• Regulated Accumulation of Desmosterol Integrates Macrophage Lipid Metabolism and Inflammatory Responses

  Spann NJ, Garmire L, McDonald JF, Meyers DS, Milne SB, Shibata N, Reichart D, Fox JN, Heudobler D, Raetz CR, Wang EW, Kelly SL, Sullards MC, Murphy RC, Merrill AH, Brown A, Dennis EA, Li AC, Fahy E, Subramaniam S, Quehenberger O, Russell DW, Glass C

  Cell 151, 138-152 (2012)

  doi: [10.1016/j.cell.2012.06.054]

• Gene-expression measurement: variance-modeling considerations for robust data analysis.

  Subramaniam S, Hsiao G

  Nat Immunol 13, 199-203 (2012)

  PMID: 22344273

• LIPID MAPS-Nature Lipidomics Gateway: An online resource for students and educators interested in lipids .

  Sud M, Fahy E, Cotter D, Dennis EA, Subramaniam S

  J Chem Educ 89, 291-292 (2012)

  doi: [10.1021/ed200088u]

• Template-based combinatorial enumeration of virtual compound libraries for lipids.

  Sud M, Fahy E, Subramaniam S.

  Journal of Cheminformatics 4 23. (2012)

  PMID:23006594 doi: [10.1186/1758-2946-4-23]

• Differential expression of oxidation-specific epitopes and apolipoprotein(a) in progressing and ruptured human coronary and carotid atherosclerotic lesions.

  van Dijk RA, Kolodgie F, Ravandi A, Leibundgut G, Hu PP, Prasad A, Mahmud E, Dennis E, Curtiss LK, Witztum JL, Wasserman BA, Otsuka F, Virmani R, Tsimikas S.

  J Lipid Res 53 12. (2012)

  PMID:22969153 doi: [10.1194/jlr.P030890]

• A complex LuxR-LuxI type quorum sensing network in a roseobacterial marine sponge symbiont activates flagellar motility and inhibits biofilm formation.

  Zan J, Cicirelli EM, Mohamed NM, Sibhatu H, Kroll S, Choi O, Uhlson CL, Wysoczinski CL, Murphy RC, Churchill ME, Hill RT, Fuqua C

  Mol Microbiol 85, 21025-21033. (2012)

  doi: [10.1111/j.1365-2958.2012.08149.x] PMID: 22539345