Research library - LIPID MAPS Publications: 2006

Key Lipidomics Publications

Special issues, with significant contributions from members of the LIPID MAPS Consortium

Lipid Biochemistry, Metabolism, and Signaling Editorial
Edited by H. Alex Brown and Lawrence J. Marnett. Chemical Reviews, 111, 5817-6512 (2011)
Lipidomics and Imaging Mass Spectrometry
Edited by Alfred H. Merrill and Robert C. Murphy. BBA - Molecular and Cellular Biology of Lipids, 1811, 635-1000 (2011)
Lipidomics and Bioactive Lipids: Mass-Spectrometry-Based Lipid Analysis
Edited by H. Alex Brown. Methods in Enzymology, 432, 1-387 (2007)
- Download all LIPID MAPS Chapters (PDF).

Peer-reviewed journal articles

A community-driven global reconstruction of human metabolism.
Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.
Macrophages, Inflammation, and Insulin Resistance
Jerrold M. Olefsky, Christopher K. Glass Annual Review of Physiology, 72 219-246 (2010)

more key publications

LIPID MAPS Publications

Year published: 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017

2006

Pulmonary surfactant proteins and lipids as modulators of inflammation and innate immunity.

Chiba H, Piboonpocanun S, Mitsuzawa H, Kuronuma K, Murphy R and Voelker D.

Respirology 11, S2-S6 (2006)

PMID:16423264 [doi:10.1111/j.1440-1843.2006.00797.x]
LMPD: LIPID MAPS proteome database

Cotter D, Maer A, Guda C, Saunders B, Subramaniam S

Nucleic Acids Research 34, D507-10 (2006)

PMID: 16381922 [10.1093/nar/gkj122]
Liver X receptors regulate adrenal cholesterol balance.

Cummins C, Volle D, Zhang Y, McDonald J, Sion B, LefranÃ§ois-Martinez A, Caira F, VeyssiÃ¨re G, Mangelsdorf D and Lobaccaro J.

The Journal of Clinical Investigation 116, 1902-1912 (2006)

PMID:16823488 [doi:10.1172/JCI28400]
Effects of sphingosine-1-phosphate and ceramide-1-phosphate on rat intestinal smooth muscle cells: implications for postoperative ileus.

Dragusin M, Wehner S, Kelly S, Wang E, Merrill JA, Kalff J and van Echten-Deckert G.

The FASEB journal: official publication of the Federation of American Societies for Experimental Biology 20, 1930-1932 (2006)

PMID:16877527 [doi:10.1096/fj.05-5518fje]
Sphingosine-1-phosphate phosphohydrolase regulates endoplasmic reticulum-to-golgi trafficking of ceramide.

Giussani P, Maceyka M, le Stunff H, Mikami A, LÃ©pine S, Wang E, Kelly S, Merrill JA, Milstien S and Spiegel S.

Molecular and Cellular Biology 26, 5055-5069 (2006)

PMID:16782891 [doi:10.1128/MCB.02107-05]
Going nuclear in metabolic and cardiovascular disease.

Glass C.

The Journal of Clinical Investigation 116, 556-560 (2006)

PMID:16511587 [doi:10.1172/JCI27913]
Combinatorial roles of nuclear receptors in inflammation and immunity.

Glass C and Ogawa S.

Nature Reviews Immunology 6, 44-55 (2006)

PMID:16493426 [doi:10.1038/nri1748]
Specificity of acyl-homoserine lactone synthases examined by mass spectrometry.

Gould T, Herman J, Krank J, Murphy R & Churchill M.

Journal of Bacteriology 188, 773-783 (2006)

PMID:16385066 [doi:10.1128/JB.188.2.773-783.2006]
Expression cloning of three Rhizobium leguminosarum lipopolysaccharide core galacturonosyltransferases.

Kanjilal-Kolar S, Basu SS, Kanipes MI, Guan Z, Garrett TA and Raetz CRH.

The Journal of Biological Chemistry 281, 12865-78 (2006)

PMID:16497674 [doi:10.1074/jbc.M513864200]
Dodecaprenyl phosphate-galacturonic acid as a donor substrate for lipopolysaccharide core glycosylation in Rhizobium leguminosarum.

Kanjilal-Kolar S and Raetz C.

The Journal of Biological Chemistry 281, 12879-12887 (2006)

PMID:16497671 [doi:10.1074/jbc.M513865200]
Quorum-sensing signal synthesis by the Yersinia pestis acyl-homoserine lactone synthase YspI.

Kirwan J, Gould T, Schweizer H, Bearden S, Murphy R & Churchill M.

Journal of Bacteriology 188, 784-788 (2006)

PMID:16385067 [doi:10.1128/JB.188.2.784-788.2006]
Functional characterization of the promoter for the mouse SPTLC2 gene, which encodes subunit 2 of serine palmitoyltransferase.

Linn S, Andras L, Kim H, Wei J, Nagiec M, Dickson R and Merrill JA.

FEBS Letters 580, 6217-6223 (2006)

PMID:17070807 [doi:10.1016/j.febslet.2006.10.025]
Lipidomics: an analysis of cellular lipids by ESI-MS.

Milne S, Ivanova P, Forrester J and Brown H.

Methods 39, 92-103 (2006)

PMID:16846739 [doi:10.1016/j.ymeth.2006.05.014]
LC/MS methodology in lipid analysis and structural characterization of novel lipid species

Murphy RC, Krank J, Barkley RM
in Functional Lipidomics
L. Feng and G. Prestwich, Editors CRC Press/Taylor & Francis Group, Boca Raton, FL 17-55 (2006)
Identification of signaling components required for the prediction of cytokine release in RAW 264.7 macrophages

Pradervand S, Maurya MR, Subramaniam S

Genome Biolology 7, R11 (2006)

PMID:16507166 [10.1186/gb-2006-7-2-r11]
Kdo2-Lipid A of Escherichia coli, a defined endotoxin that activates macrophages via TLR-4.

Raetz C, Garrett T, Reynolds C, Shaw W, Moore J, Smith JD, Ribeiro A, Murphy R, Ulevitch R, Fearns C, Reichart D, Glass C, Benner C, Subramaniam S, Harkewicz R, Bowers-Gentry R, Buczynski M, Cooper J, Deems R and Dennis E.

Journal of Lipid Research 47, 1097-1111 (2006)

PMID:16479018 [doi:10.1194/jlr.M600027-JLR200]
Relevant LIPID MAPS experimental data:
Microarray analysis of RAW 264.7 cells treated with Kdo₂-Lipid A
Microarray analysis of RAW 264.7 cells treated with Kdo₂-Lipid A and compactin
Glucosylceramide synthase is an essential regulator of pathogenicity of Cryptococcus neoformans.

Rittershaus P, Kechichian T, Allegood J, Merrill JA, Hennig M, Luberto C & del Poeta M.

The Journal of Clinical Investigation 116, 1651-1659 (2006)

PMID:16741577 [doi:10.1172/JCI27890]
Lipid profiling reveals arachidonate deficiency in RAW264.7 cells: Structural and functional implications.

Rouzer C, Ivanova P, Byrne M, Milne S, Marnett L & Brown H.

Biochemistry 45, 14795-14808 (2006)

PMID:17144673 [doi:10.1021/bi061723j]
Crystallization and preliminary X-ray diffraction analysis of phospholipid-bound Sfh1p, a member of the Saccharomyces cerevisiae Sec14p-like phosphatidylinositol transfer protein family.

Schaaf G, Betts L, Garrett T, Raetz C and Bankaitis V.

Acta Crystallographica 62, 1156-1160 (2006)

PMID:17077504 [doi:10.1107/S1744309106041728]
LMSD: LIPID MAPS structure database.

Sud M, Fahy E, Cotter D, Brown A, Dennis E, Glass C, , Murphy R, Raetz C, Russell D and Subramaniam S.

Nucleic Acids Research 35, D527-32 (2006)

PMID:17098933 [doi:10.1093/nar/gkl838]
Structure and biosynthesis of free lipid A molecules that replace lipopolysaccharide in Francisella tularensis subsp. novicida.

Wang X, Ribeiro A, Guan Z, McGrath S, Cotter R and Raetz C.

Biochemistry 45, 14427-14440 (2006)

PMID:17128982 [doi:10.1021/bi061767s]
Sterol intermediates from cholesterol biosynthetic pathway as liver X receptor ligands.

Yang C, McDonald J, Patel A, Zhang Y, Umetani M, Xu F, Westover E, Covey D, Mangelsdorf D, Cohen J and Hobbs H.

The Journal of Biological Chemistry 281, 27816-27826 (2006)

PMID:16857673 [doi:10.1074/jbc.M603781200]
Mutation of beta-glucosidase 2 causes glycolipid storage disease and impaired male fertility.

Yildiz Y, Matern H, Thompson B, Allegood J, Warren R, Ramirez D, Hammer R, Hamra F, Matern S and Russell D.

The Journal of Clinical Investigation 116, 2985-2994 (2006)

PMID:17080196 [doi:10.1172/JCI29224]
Analysis of polyunsaturated aminophospholipid molecular species using isotope-tagged derivatives and tandem mass spectrometry/mass spectrometry/mass spectrometry.

Zemski K and Murphy R.

Analytical Biochemistry 349, 118-128 (2006)

PMID:16384548 [doi:10.1016/j.ab.2005.11.020]
Ceramides and other bioactive sphingolipid backbones in health and disease: lipidomic analysis, metabolism and roles in membrane structure, dynamics, signaling and autophagy.

Zheng W, Kollmeyer J, Symolon H, Momin A, Munter E, Wang E, Kelly S, Allegood J, Liu Y, Peng Q, Ramaraju H, Sullards M, Cabot M and Merrill JA.

Biochimica et Biophysica Acta 1758, 1864-1884 (2006)

PMID:17052686 [doi:10.1016/j.bbamem.2006.08.009]

Research library - LIPID MAPS Publications: 2006

Key Lipidomics Publications

LIPID MAPS Publications

2006

Pulmonary surfactant proteins and lipids as modulators of inflammation and innate immunity.

LMPD: LIPID MAPS proteome database

Liver X receptors regulate adrenal cholesterol balance.

Effects of sphingosine-1-phosphate and ceramide-1-phosphate on rat intestinal smooth muscle cells: implications for postoperative ileus.

Sphingosine-1-phosphate phosphohydrolase regulates endoplasmic reticulum-to-golgi trafficking of ceramide.

Going nuclear in metabolic and cardiovascular disease.

Combinatorial roles of nuclear receptors in inflammation and immunity.

Specificity of acyl-homoserine lactone synthases examined by mass spectrometry.

Expression cloning of three Rhizobium leguminosarum lipopolysaccharide core galacturonosyltransferases.

Dodecaprenyl phosphate-galacturonic acid as a donor substrate for lipopolysaccharide core glycosylation in Rhizobium leguminosarum.

Quorum-sensing signal synthesis by the Yersinia pestis acyl-homoserine lactone synthase YspI.

Functional characterization of the promoter for the mouse SPTLC2 gene, which encodes subunit 2 of serine palmitoyltransferase.

Lipidomics: an analysis of cellular lipids by ESI-MS.

LC/MS methodology in lipid analysis and structural characterization of novel lipid species

Identification of signaling components required for the prediction of cytokine release in RAW 264.7 macrophages

Kdo2-Lipid A of Escherichia coli, a defined endotoxin that activates macrophages via TLR-4.

Glucosylceramide synthase is an essential regulator of pathogenicity of Cryptococcus neoformans.

Lipid profiling reveals arachidonate deficiency in RAW264.7 cells: Structural and functional implications.

Crystallization and preliminary X-ray diffraction analysis of phospholipid-bound Sfh1p, a member of the Saccharomyces cerevisiae Sec14p-like phosphatidylinositol transfer protein family.

LMSD: LIPID MAPS structure database.

Structure and biosynthesis of free lipid A molecules that replace lipopolysaccharide in Francisella tularensis subsp. novicida.

Sterol intermediates from cholesterol biosynthetic pathway as liver X receptor ligands.

Mutation of beta-glucosidase 2 causes glycolipid storage disease and impaired male fertility.

Analysis of polyunsaturated aminophospholipid molecular species using isotope-tagged derivatives and tandem mass spectrometry/mass spectrometry/mass spectrometry.

Ceramides and other bioactive sphingolipid backbones in health and disease: lipidomic analysis, metabolism and roles in membrane structure, dynamics, signaling and autophagy.