Research library - LIPID MAPS Publications: 2005

Key Lipidomics Publications

Special issues, with significant contributions from members of the LIPID MAPS Consortium

• Lipid Biochemistry, Metabolism, and Signaling Editorial

  Edited by H. Alex Brown and Lawrence J. Marnett. Chemical Reviews, 111, 5817-6512 (2011)

• Lipidomics and Imaging Mass Spectrometry

  Edited by Alfred H. Merrill and Robert C. Murphy. BBA - Molecular and Cellular Biology of Lipids, 1811, 635-1000 (2011)

• Lipidomics and Bioactive Lipids: Mass-Spectrometry-Based Lipid Analysis

  Edited by H. Alex Brown. Methods in Enzymology, 432, 1-387 (2007)
  - Download all LIPID MAPS Chapters (PDF).

Peer-reviewed journal articles

• A community-driven global reconstruction of human metabolism.

  Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.

• Macrophages, Inflammation, and Insulin Resistance

  Jerrold M. Olefsky, Christopher K. Glass Annual Review of Physiology, 72 219-246 (2010)

more key publications

Year published: 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017

• The LIPID MAPS approach to lipidomics in Functional Lipidomics

  Dennis EA, Brown HA, Deems RA, Glass CK, Merrill AH, Jr., Murphy RC, Raetz CR, Shaw W, Subramaniam S, Russell DW, vanNieuwenhze MS, White SH, Witztum JL, and Wooley J L.

  in Functional Lipidomics Feng and G. Prestwich, Editors CRC Press/Taylor & Francis Group, Boca Raton, FL 1-15 (2005)

• A comprehensive classification system for lipids.

  Fahy E, Subramaniam S, Brown H, Glass C, Merrill JA, Murphy R, Raetz C, Russell D, Seyama Y, Shaw W, Shimizu T, Spener F, van Meer G, Vannieuwenhze M, White S, Witztum J and Dennis E.

  Journal of Lipid Research 46, 839-861 (2005)

  PMID: 15722563 [doi:10.1194/jlr.E400004-JLR200]

• Extraction and identification by mass spectrometry of undecaprenyl diphosphate-MurNAc-pentapeptide-GlcNAc from Escherichia coli.

  Guan Z, Breazeale S & Raetz C.

  Analytical Biochemistry 345, 336-339 (2005)

  PMID: 16118008 [doi:10.1016/j.ab.2005.07.002]

• VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data

  Hsiao A, Ideker T, Olefsky JM, Subramaniam S

  Nucleic Acids Research 33, W627-32 (2005)

  PMID: [10.1016/10.1093/nar/gki443]

• Fibroblast growth factor 15 functions as an enterohepatic signal to regulate bile acid homeostasis.

  Inagaki T, Choi M, Moschetta A, Peng L, Cummins CL, McDonald JG, Luo G, Jones SA, Goodwin B, Richardson JA, Gerard RD, Repa JJ, Mangelsdorf DJ and Kliewer SA.

  Cellular Metabolism 2, 217-225 (2005)

  PMID: 16213224 [doi:10.1016/j.cmet.2005.09.001]

• SphK1 and SphK2, sphingosine kinase isoenzymes with opposing functions in sphingolipid metabolism.

  Maceyka M, Sankala H, Hait N, le Stunff H, Liu H, Toman R, Collier C, Zhang M, Satin L, Merrill JA, Milstien S and Spiegel S.

  The Journal of Biological Chemistry 280, 37118-37129 (2005)

  PMID: 16118219 [doi:10.1074/jbc.M502207200]

• Direct qualitative analysis of triacylglycerols by electrospray mass spectrometry using a linear ion trap.

  McAnoy AM, Wu CC & Murphy RC.

  Journal of the American Society for Mass Spectrometry 16, 1498-1509 (2005)

  PMID: 16019221 [doi:10.1016/j.jasms.2005.04.017]

• A slow, tight-binding inhibitor of the zinc-dependent deacetylase LpxC of lipid A biosynthesis with antibiotic activity comparable to ciprofloxacin.

  McClerren AL, Endsley S, Bowman JL, Andersen NH, Guan Z, Rudolph J and Raetz CRH.

  Biochemistry 44, 16574-16583 (2005)

  PMID: 16342948 [doi:10.1021/bi0518186]

• Sphingolipidomics: high-throughput, structure-specific, and quantitative analysis of sphingolipids by liquid chromatography tandem mass spectrometry.

  Merrill JA, Sullards M, Allegood J, Kelly S & Wang E.

  Methods 36, 207-224 (2005)

  PMID: 15894491 [doi:10.1016/j.ymeth.2005.01.009]

• A targeted mass spectrometric analysis of phosphatidylinositol phosphate species.

  Milne S, Ivanova P, Decamp D, Hsueh R and Brown H.

  Journal of Lipid Research 46, 1796-1802 (2005)

  PMID: 15897608 [doi:10.1194/jlr.D500010-JLR200]

• Electrospray ionization and tandem mass spectrometry of eicosanoids.

  Murphy R, Barkley R, Berry K, Hankin J, Harrison K, Johnson C, Krank J, McAnoy A, Uhlson C and Zarini S.

  Analytical Biochemistry 346, 1-42 (2005)

  PMID: 15961057 [doi:10.1016/j.ab.2005.04.042]

• Mass spectrometry advances in lipidomica: collision-induced decomposition of Kdo2-lipid A.

  Murphy R, Raetz C, Reynolds C and Barkley R.

  Prostaglandins & Other Lipid Mediators 77, 131-140 (2005)

  PMID: 16099398 [doi:10.1016/j.prostaglandins.2004.09.004]

• Molecular determinants of crosstalk between nuclear receptors and toll-like receptors.

  Ogawa S, Lozach J, Benner C, Pascual G, Tangirala R, Westin S, Hoffmann A, Subramaniam S, David M, Rosenfeld M and Glass C.

  Cell 122, 707-721 (2005)

  PMID: 16143103 [doi:10.1016/j.cell.2005.06.029]

• Modulation of human nuclear receptor LRH-1 activity by phospholipids and SHP.

  Ortlund E, Lee Y, Solomon I, Hager J, Safi R, Choi Y, Guan Z, Tripathy A, Raetz C, McDonnell D, Moore D and Redinbo M.

  Nature Structural & Molecular Biology 12, 357-363 (2005)

  PMID: 15723037 [doi:10.1038/nsmb910]

• Reconstruction of cellular signalling networks and analysis of their properties.

  Papin JA, Hunter T, Palsson BO and Subramaniam S.

  Nature Reviews Molecular Cell Biology 6, 99-111 (2005)

  PMID: 15654321 [doi:10.1038/nrm1570]

• Quantitation of cardiolipin molecular species in spontaneously hypertensive heart failure rats using electrospray ionization mass spectrometry.

  Sparagna G, Johnson C, McCune S, Moore R and Murphy R.

  Journal of Lipid Research 46, 1196-1204 (2005)

  PMID: 15772420 [doi:10.1194/jlr.M500031-JLR200]

• Liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis of sphingolipids in lipidomics

  Sullards MC, Merrill AH, Jr. L. Feng and G.

  in Functional Lipidomics Prestwich, Editors CRC Press/Taylor & Francis Group, Boca Raton, FL 159-187

• Analysis of cell membrane aminophospholipids as isotope-tagged derivatives.

  Zemski K and Murphy R.

  Journal of Lipid Research 46, 1038-1046 (2005)

  PMID: 15716579 [doi:10.1194/jlr.M500014-JLR200]